chr1:173802557:G>A Detail (hg19) (DARS2)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr1:173,802,557-173,802,557 |
| hg38 | chr1:173,833,419-173,833,419 View the variant detail on this assembly version. |
HGVS
| Type | Transcript | Protein |
|---|---|---|
| RefSeq | ||
| Ensemble | ENST00000649689.2:c.536G>A | ENST00000649689.2:p.Arg179His |
| ENST00000648960.1:c.536G>A | ENST00000648960.1:p.Arg179His |
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:[No Data.] | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:<0.001 |
Prediction
ClinVar
| Clinical Significance |
Pathogenic
Likely pathogenic
|
| Review star |  |
| Show details | |
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
| Clinical significance | Last evaluated | Review status | Condition | Origin | Links |
|---|---|---|---|---|---|
|
Likely pathogenic
|
2023-04-11 | criteria provided, single submitter | Leukoencephalopathy with brain stem and spinal cord involvement-high lactate syndrome |
germline
|
Detail |
|
Pathogenic
Likely pathogenic
|
2023-03-17 | criteria provided, multiple submitters, no conflicts | not provided |
germline
|
Detail |
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.481 | Leukoencephalopathy with Brainstem and Spinal Cord Involvement and Lactate Elevation | NA | CLINVAR | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| NM_018122.5(DARS2):c.536G>A (p.Arg179His) AND Leukoencephalopathy with brain stem and spinal cord in... | ClinVar | Detail |
| NM_018122.5(DARS2):c.536G>A (p.Arg179His) AND not provided | ClinVar | Detail |
| NA | DisGeNET | Detail |
Overlapped Transcript Coordinates
| Gene | Transcript ID | Exon Number | Chromosome | Start | Stop | Type | Amino Mutation | Transcript Position | Links |
|---|
Overlapped Transcript
| Gene | Transcript ID | Chromosome | Start | Stop | Links |
|---|
- Gene
- -
- dbSNP
- rs121918210 dbSNP
- Genome
- hg19
- Position
- chr1:173,802,557-173,802,557
- Variant Type
- snv
- Reference Allele
- G
- Alternative Allele
- A
- East Asian Chromosome Counts (ExAC)
- 8514
- East Asian Allele Counts (ExAC)
- 0
- East Asian Heterozygous Counts (ExAC)
- 0
- East Asian Homozygous Counts (ExAC)
- 0
- East Asian Allele Frequency (ExAC)
- 0.0
- Chromosome Counts in All Race (ExAC)
- 118466
- Allele Counts in All Race (ExAC)
- 11
- Heterozygous Counts in All Race (ExAC)
- 11
- Homozygous Counts in All Race (ExAC)
- 0
- Allele Frequency in All Race (ExAC)
- 9.285364577178262E-5
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